/* * include/shard/WIRS.h * * Copyright (C) 2023 Dong Xie * * All rights reserved. Published under the Modified BSD License. * */ #pragma once #include #include #include #include #include "ds/PriorityQueue.h" #include "util/Cursor.h" #include "ds/Alias.h" #include "ds/BloomFilter.h" #include "util/Record.h" #include "framework/MutableBuffer.h" namespace de { struct sample_state; template bool check_deleted(Record* record, sample_state *state); extern thread_local size_t bounds_rejections; extern thread_local size_t tombstone_rejections; thread_local size_t m_wirsrun_cancelations = 0; template class WIRS { private: struct wirs_node { struct wirs_node *left, *right; K low, high; W weight; Alias* alias; }; struct WIRSState { W tot_weight; std::vector nodes; Alias* top_level_alias; ~WIRSState() { if (top_level_alias) delete top_level_alias; } }; public: WIRS(MutableBuffer* buffer, BloomFilter* bf, bool tagging) : m_reccnt(0), m_tombstone_cnt(0), m_deleted_cnt(0), m_total_weight(0), m_rejection_cnt(0), m_ts_check_cnt(0), m_tagging(tagging), m_root(nullptr) { size_t alloc_size = (buffer->get_record_count() * sizeof(Record)) + (CACHELINE_SIZE - (buffer->get_record_count() * sizeof(Record)) % CACHELINE_SIZE); assert(alloc_size % CACHELINE_SIZE == 0); m_data = (Record*)std::aligned_alloc(CACHELINE_SIZE, alloc_size); size_t offset = 0; m_reccnt = 0; auto base = buffer->sorted_output(); auto stop = base + buffer->get_record_count(); while (base < stop) { if (!m_tagging) { if (!(base->is_tombstone()) && (base + 1) < stop) { if (base->match(base + 1) && (base + 1)->is_tombstone()) { base += 2; m_wirsrun_cancelations++; continue; } } } else if (base->get_delete_status()) { base += 1; continue; } base->header &= 1; m_data[m_reccnt++] = *base; m_total_weight+= base->weight; if (bf && base->is_tombstone()) { m_tombstone_cnt++; bf->insert(base->key); } base++; } if (m_reccnt > 0) { build_wirs_structure(); } } WIRS(WIRS** runs, size_t len, BloomFilter* bf, bool tagging) : m_reccnt(0), m_tombstone_cnt(0), m_deleted_cnt(0), m_total_weight(0), m_rejection_cnt(0), m_ts_check_cnt(0), m_tagging(tagging), m_root(nullptr) { std::vector cursors; cursors.reserve(len); PriorityQueue pq(len); size_t attemp_reccnt = 0; for (size_t i = 0; i < len; ++i) { //assert(runs[i]); if (runs[i]) { auto base = runs[i]->sorted_output(); cursors.emplace_back(Cursor{base, base + runs[i]->get_record_count(), 0, runs[i]->get_record_count()}); attemp_reccnt += runs[i]->get_record_count(); pq.push(cursors[i].ptr, i); } else { cursors.emplace_back(Cursor{nullptr, nullptr, 0, 0}); } } size_t alloc_size = (attemp_reccnt * sizeof(Record)) + (CACHELINE_SIZE - (attemp_reccnt * sizeof(Record)) % CACHELINE_SIZE); assert(alloc_size % CACHELINE_SIZE == 0); m_data = (Record*)std::aligned_alloc(CACHELINE_SIZE, alloc_size); while (pq.size()) { auto now = pq.peek(); auto next = pq.size() > 1 ? pq.peek(1) : queue_record{nullptr, 0}; if (!m_tagging && !now.data->is_tombstone() && next.data != nullptr && now.data->match(next.data) && next.data->is_tombstone()) { pq.pop(); pq.pop(); auto& cursor1 = cursors[now.version]; auto& cursor2 = cursors[next.version]; if (advance_cursor(cursor1)) pq.push(cursor1.ptr, now.version); if (advance_cursor(cursor2)) pq.push(cursor2.ptr, next.version); } else { auto& cursor = cursors[now.version]; if (!m_tagging || !cursor.ptr->get_delete_status()) { m_data[m_reccnt++] = *cursor.ptr; m_total_weight += cursor.ptr->weight; if (bf && cursor.ptr->is_tombstone()) { ++m_tombstone_cnt; if (bf) bf->insert(cursor.ptr->key); } } pq.pop(); if (advance_cursor(cursor)) pq.push(cursor.ptr, now.version); } } if (m_reccnt > 0) { build_wirs_structure(); } } ~WIRS() { if (m_data) free(m_data); for (size_t i=0; i= m_reccnt) { return false; } while (idx < m_reccnt && m_data[idx].lt(key, val)) ++idx; if (m_data[idx].match(key, val, false)) { m_data[idx].set_delete_status(); m_deleted_cnt++; return true; } return false; } void free_tree(struct wirs_node* node) { if (node) { delete node->alias; free_tree(node->left); free_tree(node->right); delete node; } } Record* sorted_output() const { return m_data; } size_t get_record_count() const { return m_reccnt; } size_t get_tombstone_count() const { return m_tombstone_cnt; } const Record* get_record_at(size_t idx) const { if (idx >= m_reccnt) return nullptr; return m_data + idx; } // low - high -> decompose to a set of nodes. // Build Alias across the decomposed nodes. WIRSState* get_sample_run_state(const K& lower_key, const K& upper_key) { WIRSState* res = new WIRSState(); //std::vector nodes; //double tot_weight = decompose_node(m_root, lower_key, upper_key, res->nodes); // Simulate a stack to unfold recursion. double tot_weight = 0.0; struct wirs_node* st[64] = {0}; st[0] = m_root; size_t top = 1; while(top > 0) { auto now = st[--top]; if (covered_by(now, lower_key, upper_key) || (now->left == nullptr && now->right == nullptr && intersects(now, lower_key, upper_key))) { res->nodes.emplace_back(now); tot_weight += now->weight; } else { if (now->left && intersects(now->left, lower_key, upper_key)) st[top++] = now->left; if (now->right && intersects(now->right, lower_key, upper_key)) st[top++] = now->right; } } //assert(tot_weight > 0.0); std::vector weights; for (const auto& node: res->nodes) { weights.emplace_back(node->weight / tot_weight); } res->tot_weight = tot_weight; res->top_level_alias = new Alias(weights); return res; } // returns the number of records sampled // NOTE: This operation returns records strictly between the lower and upper bounds, not // including them. size_t get_samples(WIRSState* run_state, Record *sample_set, const K& lower_key, const K& upper_key, size_t sample_sz, sample_state *state, gsl_rng *rng) { if (sample_sz == 0) { return 0; } // k -> sampling: three levels. 1. select a node -> select a fat point -> select a record. size_t cnt = 0; size_t attempts = 0; do { ++attempts; // first level.... auto node = run_state->nodes[run_state->top_level_alias->get(rng)]; // second level... auto fat_point = node->low + node->alias->get(rng); // third level... size_t rec_offset = fat_point * m_group_size + m_alias[fat_point]->get(rng); auto record = m_data + rec_offset; if (lower_key > record->key || upper_key < record->key) { // bounds rejection bounds_rejections++; continue; } else if (record->is_tombstone() || (state && check_deleted(record, state))) { // tombstone/delete rejection tombstone_rejections++; continue; } sample_set[cnt++] = *record; } while (attempts < sample_sz); return cnt; } size_t get_lower_bound(const K& key) const { size_t min = 0; size_t max = m_reccnt - 1; const char * record_key; while (min < max) { size_t mid = (min + max) / 2; if (key > m_data[mid].key) { min = mid + 1; } else { max = mid; } } return min; } bool check_delete(K key, V val) { size_t idx = get_lower_bound(key); if (idx >= m_reccnt) { return false; } auto ptr = m_data + get_lower_bound(key); while (ptr < m_data + m_reccnt && ptr->lt(key, val)) { ptr ++; } bool result = (m_tagging) ? ptr->get_delete_status() : ptr->match(key, val, true); m_rejection_cnt += result; return result; } bool check_tombstone(const K& key, const V& val) { m_ts_check_cnt++; size_t idx = get_lower_bound(key); if (idx >= m_reccnt) { return false; } auto ptr = m_data + get_lower_bound(key); while (ptr < m_data + m_reccnt && ptr->lt(key, val)) { ptr ++; } bool result = ptr->match(key, val, true); m_rejection_cnt += result; return result; } size_t get_memory_utilization() { return 0; } size_t get_rejection_count() { return m_rejection_cnt; } size_t get_ts_check_count() { return m_ts_check_cnt; } private: bool covered_by(struct wirs_node* node, const K& lower_key, const K& upper_key) { auto low_index = node->low * m_group_size; auto high_index = std::min((node->high + 1) * m_group_size - 1, m_reccnt - 1); return lower_key < m_data[low_index].key && m_data[high_index].key < upper_key; } bool intersects(struct wirs_node* node, const K& lower_key, const K& upper_key) { auto low_index = node->low * m_group_size; auto high_index = std::min((node->high + 1) * m_group_size - 1, m_reccnt - 1); return lower_key < m_data[high_index].key && m_data[low_index].key < upper_key; } struct wirs_node* construct_wirs_node(const std::vector& weights, size_t low, size_t high) { if (low == high) { return new wirs_node{nullptr, nullptr, low, high, weights[low], new Alias({1.0})}; } else if (low > high) return nullptr; std::vector node_weights; W sum = 0; for (size_t i = low; i < high; ++i) { node_weights.emplace_back(weights[i]); sum += weights[i]; } for (auto& w: node_weights) if (sum) w /= sum; else w = 1.0 / node_weights.size(); size_t mid = (low + high) / 2; return new wirs_node{construct_wirs_node(weights, low, mid), construct_wirs_node(weights, mid + 1, high), low, high, sum, new Alias(node_weights)}; } void build_wirs_structure() { m_group_size = std::ceil(std::log(m_reccnt)); size_t n_groups = std::ceil((double) m_reccnt / (double) m_group_size); // Fat point construction + low level alias.... double sum_weight = 0.0; std::vector weights; std::vector group_norm_weight; size_t i = 0; size_t group_no = 0; while (i < m_reccnt) { double group_weight = 0.0; group_norm_weight.clear(); for (size_t k = 0; k < m_group_size && i < m_reccnt; ++k, ++i) { auto w = m_data[i].weight; group_norm_weight.emplace_back(w); group_weight += w; sum_weight += w; } for (auto& w: group_norm_weight) if (group_weight) w /= group_weight; else w = 1.0 / group_norm_weight.size(); m_alias.emplace_back(new Alias(group_norm_weight)); weights.emplace_back(group_weight); } assert(weights.size() == n_groups); m_root = construct_wirs_node(weights, 0, n_groups-1); } Record* m_data; std::vector m_alias; wirs_node* m_root; bool m_tagging; W m_total_weight; size_t m_reccnt; size_t m_tombstone_cnt; size_t m_group_size; size_t m_ts_check_cnt; size_t m_deleted_cnt; // The number of rejections caused by tombstones // in this WIRS. size_t m_rejection_cnt; }; }