/* * include/shard/PGM.h * * Copyright (C) 2023 Douglas B. Rumbaugh * * All rights reserved. Published under the Modified BSD License. * */ #pragma once #include #include #include #include #include #include "framework/ShardRequirements.h" #include "pgm/pgm_index.hpp" #include "psu-ds/PriorityQueue.h" #include "util/Cursor.h" #include "psu-ds/BloomFilter.h" #include "util/bf_config.h" using psudb::CACHELINE_SIZE; using psudb::BloomFilter; using psudb::PriorityQueue; using psudb::queue_record; using psudb::Alias; namespace de { template class PGM { private: typedef decltype(R::key) K; typedef decltype(R::value) V; public: PGM(MutableBuffer* buffer) : m_reccnt(0), m_tombstone_cnt(0) { m_alloc_size = (buffer->get_record_count() * sizeof(Wrapped)) + (CACHELINE_SIZE - (buffer->get_record_count() * sizeof(Wrapped)) % CACHELINE_SIZE); assert(m_alloc_size % CACHELINE_SIZE == 0); m_data = (Wrapped*)std::aligned_alloc(CACHELINE_SIZE, m_alloc_size); std::vector keys; size_t offset = 0; m_reccnt = 0; auto base = buffer->get_data(); auto stop = base + buffer->get_record_count(); std::sort(base, stop, std::less>()); K min_key = base->rec.key; K max_key = (stop - 1)->rec.key; while (base < stop) { if (!(base->is_tombstone()) && (base + 1) < stop) { if (base->rec == (base + 1)->rec && (base + 1)->is_tombstone()) { base += 2; continue; } } else if (base->is_deleted()) { base += 1; continue; } // FIXME: this shouldn't be necessary, but the tagged record // bypass doesn't seem to be working on this code-path, so this // ensures that tagged records from the buffer are able to be // dropped, eventually. It should only need to be &= 1 base->header &= 3; m_data[m_reccnt++] = *base; keys.emplace_back(base->rec.key); base++; } if (m_reccnt > 0) { m_pgm = pgm::PGMIndex(keys); } } PGM(PGM** shards, size_t len) : m_reccnt(0), m_tombstone_cnt(0) { std::vector>> cursors; cursors.reserve(len); PriorityQueue> pq(len); size_t attemp_reccnt = 0; size_t tombstone_count = 0; for (size_t i = 0; i < len; ++i) { if (shards[i]) { auto base = shards[i]->get_data(); cursors.emplace_back(Cursor{base, base + shards[i]->get_record_count(), 0, shards[i]->get_record_count()}); attemp_reccnt += shards[i]->get_record_count(); tombstone_count += shards[i]->get_tombstone_count(); pq.push(cursors[i].ptr, i); } else { cursors.emplace_back(Cursor>{nullptr, nullptr, 0, 0}); } } m_alloc_size = (attemp_reccnt * sizeof(Wrapped)) + (CACHELINE_SIZE - (attemp_reccnt * sizeof(Wrapped)) % CACHELINE_SIZE); assert(m_alloc_size % CACHELINE_SIZE == 0); m_data = (Wrapped*)std::aligned_alloc(CACHELINE_SIZE, m_alloc_size); std::vector keys; while (pq.size()) { auto now = pq.peek(); auto next = pq.size() > 1 ? pq.peek(1) : queue_record>{nullptr, 0}; if (!now.data->is_tombstone() && next.data != nullptr && now.data->rec == next.data->rec && next.data->is_tombstone()) { pq.pop(); pq.pop(); auto& cursor1 = cursors[now.version]; auto& cursor2 = cursors[next.version]; if (advance_cursor>(cursor1)) pq.push(cursor1.ptr, now.version); if (advance_cursor>(cursor2)) pq.push(cursor2.ptr, next.version); } else { auto& cursor = cursors[now.version]; if (!cursor.ptr->is_deleted()) { m_data[m_reccnt++] = *cursor.ptr; keys.emplace_back(cursor.ptr->rec.key); } pq.pop(); if (advance_cursor>(cursor)) pq.push(cursor.ptr, now.version); } } if (m_reccnt > 0) { m_pgm = pgm::PGMIndex(keys); } } ~PGM() { if (m_data) free(m_data); } Wrapped *point_lookup(const R &rec, bool filter=false) { size_t idx = get_lower_bound(rec.key); if (idx >= m_reccnt) { return nullptr; } while (idx < m_reccnt && m_data[idx].rec < rec) ++idx; if (m_data[idx].rec == rec) { return m_data + idx; } return nullptr; } Wrapped* get_data() const { return m_data; } size_t get_record_count() const { return m_reccnt; } size_t get_tombstone_count() const { return m_tombstone_cnt; } const Wrapped* get_record_at(size_t idx) const { if (idx >= m_reccnt) return nullptr; return m_data + idx; } size_t get_memory_usage() { return m_pgm.size_in_bytes() + m_alloc_size; } size_t get_aux_memory_usage() { return 0; } size_t get_lower_bound(const K& key) const { auto bound = m_pgm.search(key); size_t idx = bound.lo; if (idx >= m_reccnt) { return m_reccnt; } // If the region to search is less than some pre-specified // amount, perform a linear scan to locate the record. if (bound.hi - bound.lo < 256) { while (idx < bound.hi && m_data[idx].rec.key < key) { idx++; } } else { // Otherwise, perform a binary search idx = bound.lo; size_t max = bound.hi; while (idx < max) { size_t mid = (idx + max) / 2; if (key > m_data[mid].rec.key) { idx = mid + 1; } else { max = mid; } } } if (m_data[idx].rec.key > key && idx > 0 && m_data[idx-1].rec.key <= key) { return idx-1; } return (m_data[idx].rec.key >= key) ? idx : m_reccnt; } private: Wrapped* m_data; size_t m_reccnt; size_t m_tombstone_cnt; size_t m_alloc_size; K m_max_key; K m_min_key; pgm::PGMIndex m_pgm; }; }