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authorDouglas Rumbaugh <dbr4@psu.edu>2025-09-25 14:42:44 -0400
committerDouglas Rumbaugh <dbr4@psu.edu>2025-09-25 14:42:44 -0400
commitcf5f3bbb0cb58430ed68ad3ebfcefc009e553d71 (patch)
tree4c17bc3169ee195c236cea9c9efda0aef7488e3c /include/shard/PGM.h
parent826c1fff5accbaa6b415acc176a5acbeb5f691b6 (diff)
downloaddynamic-extension-cf5f3bbb0cb58430ed68ad3ebfcefc009e553d71.tar.gz
Code reformatting
Diffstat (limited to 'include/shard/PGM.h')
-rw-r--r--include/shard/PGM.h451
1 files changed, 220 insertions, 231 deletions
diff --git a/include/shard/PGM.h b/include/shard/PGM.h
index 5b39ab4..40c9141 100644
--- a/include/shard/PGM.h
+++ b/include/shard/PGM.h
@@ -13,7 +13,6 @@
*/
#pragma once
-
#include <vector>
#include "framework/ShardRequirements.h"
@@ -23,278 +22,268 @@
#include "util/SortedMerge.h"
#include "util/bf_config.h"
-using psudb::CACHELINE_SIZE;
using psudb::BloomFilter;
+using psudb::byte;
+using psudb::CACHELINE_SIZE;
using psudb::PriorityQueue;
using psudb::queue_record;
-using psudb::byte;
namespace de {
-template <RecordInterface R, size_t epsilon=128>
-class PGM {
+template <RecordInterface R, size_t epsilon = 128> class PGM {
public:
- typedef R RECORD;
+ typedef R RECORD;
+
private:
- typedef decltype(R::key) K;
- typedef decltype(R::value) V;
+ typedef decltype(R::key) K;
+ typedef decltype(R::value) V;
public:
- PGM(BufferView<R> buffer)
- : m_bf(nullptr)
- , m_reccnt(0)
- , m_tombstone_cnt(0)
- , m_alloc_size(0) {
-
- m_alloc_size = psudb::sf_aligned_alloc(CACHELINE_SIZE,
- buffer.get_record_count() *
- sizeof(Wrapped<R>),
- (byte**) &m_data);
-
- std::vector<K> keys;
- /*
- * Copy the contents of the buffer view into a temporary buffer, and
- * sort them. We still need to iterate over these temporary records to
- * apply tombstone/deleted record filtering, as well as any possible
- * per-record processing that is required by the shard being built.
- */
- auto temp_buffer = (Wrapped<R> *) psudb::sf_aligned_calloc(CACHELINE_SIZE,
- buffer.get_record_count(),
- sizeof(Wrapped<R>));
- buffer.copy_to_buffer((byte *) temp_buffer);
-
- auto base = temp_buffer;
- auto stop = base + buffer.get_record_count();
- std::sort(base, stop, std::less<Wrapped<R>>());
-
- merge_info info = {0, 0};
-
- /*
- * Iterate over the temporary buffer to process the records, copying
- * them into buffer as needed
- */
- while (base < stop) {
- if (!base->is_tombstone() && (base + 1 < stop)
- && base->rec == (base + 1)->rec && (base + 1)->is_tombstone()) {
- base += 2;
- continue;
- } else if (base->is_deleted()) {
- base += 1;
- continue;
- }
-
- // FIXME: this shouldn't be necessary, but the tagged record
- // bypass doesn't seem to be working on this code-path, so this
- // ensures that tagged records from the buffer are able to be
- // dropped, eventually. It should only need to be &= 1
- base->header &= 3;
- keys.emplace_back(base->rec.key);
- m_data[info.record_count++] = *base;
-
- if (base->is_tombstone()) {
- info.tombstone_count++;
- if (m_bf){
- m_bf->insert(base->rec);
- }
- }
-
- base++;
+ PGM(BufferView<R> buffer)
+ : m_bf(nullptr), m_reccnt(0), m_tombstone_cnt(0), m_alloc_size(0) {
+
+ m_alloc_size = psudb::sf_aligned_alloc(
+ CACHELINE_SIZE, buffer.get_record_count() * sizeof(Wrapped<R>),
+ (byte **)&m_data);
+
+ std::vector<K> keys;
+ /*
+ * Copy the contents of the buffer view into a temporary buffer, and
+ * sort them. We still need to iterate over these temporary records to
+ * apply tombstone/deleted record filtering, as well as any possible
+ * per-record processing that is required by the shard being built.
+ */
+ auto temp_buffer = (Wrapped<R> *)psudb::sf_aligned_calloc(
+ CACHELINE_SIZE, buffer.get_record_count(), sizeof(Wrapped<R>));
+ buffer.copy_to_buffer((byte *)temp_buffer);
+
+ auto base = temp_buffer;
+ auto stop = base + buffer.get_record_count();
+ std::sort(base, stop, std::less<Wrapped<R>>());
+
+ merge_info info = {0, 0};
+
+ /*
+ * Iterate over the temporary buffer to process the records, copying
+ * them into buffer as needed
+ */
+ while (base < stop) {
+ if (!base->is_tombstone() && (base + 1 < stop) &&
+ base->rec == (base + 1)->rec && (base + 1)->is_tombstone()) {
+ base += 2;
+ continue;
+ } else if (base->is_deleted()) {
+ base += 1;
+ continue;
+ }
+
+ // FIXME: this shouldn't be necessary, but the tagged record
+ // bypass doesn't seem to be working on this code-path, so this
+ // ensures that tagged records from the buffer are able to be
+ // dropped, eventually. It should only need to be &= 1
+ base->header &= 3;
+ keys.emplace_back(base->rec.key);
+ m_data[info.record_count++] = *base;
+
+ if (base->is_tombstone()) {
+ info.tombstone_count++;
+ if (m_bf) {
+ m_bf->insert(base->rec);
}
+ }
- free(temp_buffer);
-
- m_reccnt = info.record_count;
- m_tombstone_cnt = info.tombstone_count;
-
- if (m_reccnt > 0) {
- m_pgm = pgm::PGMIndex<K, epsilon>(keys);
- }
+ base++;
}
- PGM(std::vector<const PGM*> const &shards)
- : m_data(nullptr)
- , m_bf(nullptr)
- , m_reccnt(0)
- , m_tombstone_cnt(0)
- , m_alloc_size(0) {
-
- size_t attemp_reccnt = 0;
- size_t tombstone_count = 0;
- auto cursors = build_cursor_vec<R, PGM>(shards, &attemp_reccnt, &tombstone_count);
-
- m_alloc_size = psudb::sf_aligned_alloc(CACHELINE_SIZE,
- attemp_reccnt * sizeof(Wrapped<R>),
- (byte **) &m_data);
- std::vector<K> keys;
-
- // FIXME: For smaller cursor arrays, it may be more efficient to skip
- // the priority queue and just do a scan.
- PriorityQueue<Wrapped<R>> pq(cursors.size());
- for (size_t i=0; i<cursors.size(); i++) {
- pq.push(cursors[i].ptr, i);
- }
+ free(temp_buffer);
- merge_info info = {0, 0};
- while (pq.size()) {
- auto now = pq.peek();
- auto next = pq.size() > 1 ? pq.peek(1) : queue_record<Wrapped<R>>{nullptr, 0};
- /*
- * if the current record is not a tombstone, and the next record is
- * a tombstone that matches the current one, then the current one
- * has been deleted, and both it and its tombstone can be skipped
- * over.
- */
- if (!now.data->is_tombstone() && next.data != nullptr &&
- now.data->rec == next.data->rec && next.data->is_tombstone()) {
-
- pq.pop(); pq.pop();
- auto& cursor1 = cursors[now.version];
- auto& cursor2 = cursors[next.version];
- if (advance_cursor(cursor1)) pq.push(cursor1.ptr, now.version);
- if (advance_cursor(cursor2)) pq.push(cursor2.ptr, next.version);
- } else {
- auto& cursor = cursors[now.version];
- /* skip over records that have been deleted via tagging */
- if (!cursor.ptr->is_deleted()) {
- keys.emplace_back(cursor.ptr->rec.key);
- m_data[info.record_count++] = *cursor.ptr;
-
- /*
- * if the record is a tombstone, increment the ts count and
- * insert it into the bloom filter if one has been
- * provided.
- */
- if (cursor.ptr->is_tombstone()) {
- info.tombstone_count++;
- if (m_bf) {
- m_bf->insert(cursor.ptr->rec);
- }
- }
- }
- pq.pop();
-
- if (advance_cursor(cursor)) pq.push(cursor.ptr, now.version);
- }
- }
+ m_reccnt = info.record_count;
+ m_tombstone_cnt = info.tombstone_count;
- m_reccnt = info.record_count;
- m_tombstone_cnt = info.tombstone_count;
+ if (m_reccnt > 0) {
+ m_pgm = pgm::PGMIndex<K, epsilon>(keys);
+ }
+ }
+
+ PGM(std::vector<const PGM *> const &shards)
+ : m_data(nullptr), m_bf(nullptr), m_reccnt(0), m_tombstone_cnt(0),
+ m_alloc_size(0) {
+
+ size_t attemp_reccnt = 0;
+ size_t tombstone_count = 0;
+ auto cursors =
+ build_cursor_vec<R, PGM>(shards, &attemp_reccnt, &tombstone_count);
+
+ m_alloc_size = psudb::sf_aligned_alloc(
+ CACHELINE_SIZE, attemp_reccnt * sizeof(Wrapped<R>), (byte **)&m_data);
+ std::vector<K> keys;
+
+ // FIXME: For smaller cursor arrays, it may be more efficient to skip
+ // the priority queue and just do a scan.
+ PriorityQueue<Wrapped<R>> pq(cursors.size());
+ for (size_t i = 0; i < cursors.size(); i++) {
+ pq.push(cursors[i].ptr, i);
+ }
- if (m_reccnt > 0) {
- m_pgm = pgm::PGMIndex<K, epsilon>(keys);
+ merge_info info = {0, 0};
+ while (pq.size()) {
+ auto now = pq.peek();
+ auto next =
+ pq.size() > 1 ? pq.peek(1) : queue_record<Wrapped<R>>{nullptr, 0};
+ /*
+ * if the current record is not a tombstone, and the next record is
+ * a tombstone that matches the current one, then the current one
+ * has been deleted, and both it and its tombstone can be skipped
+ * over.
+ */
+ if (!now.data->is_tombstone() && next.data != nullptr &&
+ now.data->rec == next.data->rec && next.data->is_tombstone()) {
+
+ pq.pop();
+ pq.pop();
+ auto &cursor1 = cursors[now.version];
+ auto &cursor2 = cursors[next.version];
+ if (advance_cursor(cursor1))
+ pq.push(cursor1.ptr, now.version);
+ if (advance_cursor(cursor2))
+ pq.push(cursor2.ptr, next.version);
+ } else {
+ auto &cursor = cursors[now.version];
+ /* skip over records that have been deleted via tagging */
+ if (!cursor.ptr->is_deleted()) {
+ keys.emplace_back(cursor.ptr->rec.key);
+ m_data[info.record_count++] = *cursor.ptr;
+
+ /*
+ * if the record is a tombstone, increment the ts count and
+ * insert it into the bloom filter if one has been
+ * provided.
+ */
+ if (cursor.ptr->is_tombstone()) {
+ info.tombstone_count++;
+ if (m_bf) {
+ m_bf->insert(cursor.ptr->rec);
+ }
+ }
}
- }
+ pq.pop();
- ~PGM() {
- free(m_data);
- delete m_bf;
+ if (advance_cursor(cursor))
+ pq.push(cursor.ptr, now.version);
+ }
}
- Wrapped<R> *point_lookup(const R &rec, bool filter=false) const {
- size_t idx = get_lower_bound(rec.key);
- if (idx >= m_reccnt) {
- return nullptr;
- }
+ m_reccnt = info.record_count;
+ m_tombstone_cnt = info.tombstone_count;
- while (idx < m_reccnt && m_data[idx].rec < rec) ++idx;
+ if (m_reccnt > 0) {
+ m_pgm = pgm::PGMIndex<K, epsilon>(keys);
+ }
+ }
- if (m_data[idx].rec == rec) {
- return m_data + idx;
- }
+ ~PGM() {
+ free(m_data);
+ delete m_bf;
+ }
- return nullptr;
+ Wrapped<R> *point_lookup(const R &rec, bool filter = false) const {
+ size_t idx = get_lower_bound(rec.key);
+ if (idx >= m_reccnt) {
+ return nullptr;
}
- Wrapped<R>* get_data() const {
- return m_data;
- }
-
- size_t get_record_count() const {
- return m_reccnt;
- }
+ while (idx < m_reccnt && m_data[idx].rec < rec)
+ ++idx;
- size_t get_tombstone_count() const {
- return m_tombstone_cnt;
+ if (m_data[idx].rec == rec) {
+ return m_data + idx;
}
- const Wrapped<R>* get_record_at(size_t idx) const {
- if (idx >= m_reccnt) return nullptr;
- return m_data + idx;
- }
+ return nullptr;
+ }
+ Wrapped<R> *get_data() const { return m_data; }
- size_t get_memory_usage() const {
- return m_pgm.size_in_bytes();
- }
+ size_t get_record_count() const { return m_reccnt; }
- size_t get_aux_memory_usage() const {
- return (m_bf) ? m_bf->memory_usage() : 0;
- }
+ size_t get_tombstone_count() const { return m_tombstone_cnt; }
- size_t get_lower_bound(const K& key) const {
- auto bound = m_pgm.search(key);
- size_t idx = bound.lo;
+ const Wrapped<R> *get_record_at(size_t idx) const {
+ if (idx >= m_reccnt)
+ return nullptr;
+ return m_data + idx;
+ }
- if (idx >= m_reccnt) {
- return m_reccnt;
- }
+ size_t get_memory_usage() const { return m_pgm.size_in_bytes(); }
- /*
- * If the region to search is less than some pre-specified
- * amount, perform a linear scan to locate the record.
- */
- if (bound.hi - bound.lo < 256) {
- while (idx < bound.hi && m_data[idx].rec.key < key) {
- idx++;
- }
- } else {
- /* Otherwise, perform a binary search */
- idx = bound.lo;
- size_t max = bound.hi;
-
- while (idx < max) {
- size_t mid = (idx + max) / 2;
- if (key > m_data[mid].rec.key) {
- idx = mid + 1;
- } else {
- max = mid;
- }
- }
+ size_t get_aux_memory_usage() const {
+ return (m_bf) ? m_bf->memory_usage() : 0;
+ }
- }
+ size_t get_lower_bound(const K &key) const {
+ auto bound = m_pgm.search(key);
+ size_t idx = bound.lo;
- /*
- * the upper bound returned by PGM is one passed the end of the
- * array. If we are at that point, we should just return "not found"
- */
- if (idx == m_reccnt) {
- return idx;
- }
+ if (idx >= m_reccnt) {
+ return m_reccnt;
+ }
- /*
- * We may have walked one passed the actual lower bound, so check
- * the index before the current one to see if it is the actual bound
- */
- if (m_data[idx].rec.key > key && idx > 0 && m_data[idx-1].rec.key <= key) {
- return idx-1;
+ /*
+ * If the region to search is less than some pre-specified
+ * amount, perform a linear scan to locate the record.
+ */
+ if (bound.hi - bound.lo < 256) {
+ while (idx < bound.hi && m_data[idx].rec.key < key) {
+ idx++;
+ }
+ } else {
+ /* Otherwise, perform a binary search */
+ idx = bound.lo;
+ size_t max = bound.hi;
+
+ while (idx < max) {
+ size_t mid = (idx + max) / 2;
+ if (key > m_data[mid].rec.key) {
+ idx = mid + 1;
+ } else {
+ max = mid;
}
+ }
+ }
+
+ /*
+ * the upper bound returned by PGM is one passed the end of the
+ * array. If we are at that point, we should just return "not found"
+ */
+ if (idx == m_reccnt) {
+ return idx;
+ }
- /*
- * Otherwise, check idx. If it is a valid bound, then return it,
- * otherwise return "not found".
- */
- return (m_data[idx].rec.key >= key) ? idx : m_reccnt;
+ /*
+ * We may have walked one passed the actual lower bound, so check
+ * the index before the current one to see if it is the actual bound
+ */
+ if (m_data[idx].rec.key > key && idx > 0 &&
+ m_data[idx - 1].rec.key <= key) {
+ return idx - 1;
}
+ /*
+ * Otherwise, check idx. If it is a valid bound, then return it,
+ * otherwise return "not found".
+ */
+ return (m_data[idx].rec.key >= key) ? idx : m_reccnt;
+ }
+
private:
- Wrapped<R>* m_data;
- BloomFilter<R> *m_bf;
- size_t m_reccnt;
- size_t m_tombstone_cnt;
- size_t m_alloc_size;
- K m_max_key;
- K m_min_key;
- pgm::PGMIndex<K, epsilon> m_pgm;
+ Wrapped<R> *m_data;
+ BloomFilter<R> *m_bf;
+ size_t m_reccnt;
+ size_t m_tombstone_cnt;
+ size_t m_alloc_size;
+ K m_max_key;
+ K m_min_key;
+ pgm::PGMIndex<K, epsilon> m_pgm;
};
-}
+} // namespace de