diff options
| author | Douglas Rumbaugh <dbr4@psu.edu> | 2023-11-07 13:44:21 -0500 |
|---|---|---|
| committer | Douglas Rumbaugh <dbr4@psu.edu> | 2023-11-07 13:45:00 -0500 |
| commit | dca44ff5be67c279ffec11224bb2be74a042be18 (patch) | |
| tree | 168c7ccf50a4b69926b1d3b0086ef0c8b1d7995c /include/query | |
| parent | 9fd6264122f09752b4278c9ff881b4cfe906bbc8 (diff) | |
| parent | cc415c7c100a17c4e944915aeab01be99b14adb9 (diff) | |
| download | dynamic-extension-dca44ff5be67c279ffec11224bb2be74a042be18.tar.gz | |
Merge branch 'query-refactor'
Diffstat (limited to 'include/query')
| -rw-r--r-- | include/query/irs.h | 216 | ||||
| -rw-r--r-- | include/query/rangequery.h | 167 | ||||
| -rw-r--r-- | include/query/wirs.h | 240 | ||||
| -rw-r--r-- | include/query/wss.h | 204 |
4 files changed, 827 insertions, 0 deletions
diff --git a/include/query/irs.h b/include/query/irs.h new file mode 100644 index 0000000..4cb69b0 --- /dev/null +++ b/include/query/irs.h @@ -0,0 +1,216 @@ +/* + * include/query/irs.h + * + * Copyright (C) 2023 Douglas B. Rumbaugh <drumbaugh@psu.edu> + * + * All rights reserved. Published under the Modified BSD License. + * + */ +#pragma once + +#include "framework/QueryRequirements.h" + +namespace de { namespace irs { + +template <RecordInterface R> +struct Parms { + decltype(R::key) lower_bound; + decltype(R::key) upper_bound; + size_t sample_size; + gsl_rng *rng; +}; + + +template <RecordInterface R> +struct State { + size_t lower_bound; + size_t upper_bound; + size_t sample_size; + size_t total_weight; +}; + +template <RecordInterface R> +struct BufferState { + size_t cutoff; + std::vector<Wrapped<R>> records; + size_t sample_size; +}; + +template <ShardInterface S, RecordInterface R, bool Rejection=true> +class Query { +public: + constexpr static bool EARLY_ABORT=false; + constexpr static bool SKIP_DELETE_FILTER=false; + + static void *get_query_state(S *shard, void *parms) { + auto res = new State<R>(); + decltype(R::key) lower_key = ((Parms<R> *) parms)->lower_bound; + decltype(R::key) upper_key = ((Parms<R> *) parms)->upper_bound; + + res->lower_bound = shard->get_lower_bound(lower_key); + res->upper_bound = shard->get_upper_bound(upper_key); + + if (res->lower_bound == shard->get_record_count()) { + res->total_weight = 0; + } else { + res->total_weight = res->upper_bound - res->lower_bound; + } + + res->sample_size = 0; + return res; + } + + static void* get_buffer_query_state(MutableBuffer<R> *buffer, void *parms) { + auto res = new BufferState<R>(); + + res->cutoff = buffer->get_record_count(); + res->sample_size = 0; + + if constexpr (Rejection) { + return res; + } + + auto lower_key = ((Parms<R> *) parms)->lower_bound; + auto upper_key = ((Parms<R> *) parms)->upper_bound; + + for (size_t i=0; i<res->cutoff; i++) { + if (((buffer->get_data() + i)->rec.key >= lower_key) && ((buffer->get_data() + i)->rec.key <= upper_key)) { + res->records.emplace_back(*(buffer->get_data() + i)); + } + } + + return res; + } + + static void process_query_states(void *query_parms, std::vector<void*> &shard_states, void *buff_state) { + auto p = (Parms<R> *) query_parms; + auto bs = (buff_state) ? (BufferState<R> *) buff_state : nullptr; + + std::vector<size_t> shard_sample_sizes(shard_states.size()+1, 0); + size_t buffer_sz = 0; + + std::vector<size_t> weights; + if constexpr (Rejection) { + weights.push_back((bs) ? bs->cutoff : 0); + } else { + weights.push_back((bs) ? bs->records.size() : 0); + } + + size_t total_weight = 0; + for (auto &s : shard_states) { + auto state = (State<R> *) s; + total_weight += state->total_weight; + weights.push_back(state->total_weight); + } + + // if no valid records fall within the query range, just + // set all of the sample sizes to 0 and bail out. + if (total_weight == 0) { + for (size_t i=0; i<shard_states.size(); i++) { + auto state = (State<R> *) shard_states[i]; + state->sample_size = 0; + } + + return; + } + + std::vector<double> normalized_weights; + for (auto w : weights) { + normalized_weights.push_back((double) w / (double) total_weight); + } + + auto shard_alias = psudb::Alias(normalized_weights); + for (size_t i=0; i<p->sample_size; i++) { + auto idx = shard_alias.get(p->rng); + if (idx == 0) { + buffer_sz++; + } else { + shard_sample_sizes[idx - 1]++; + } + } + + if (bs) { + bs->sample_size = buffer_sz; + } + for (size_t i=0; i<shard_states.size(); i++) { + auto state = (State<R> *) shard_states[i]; + state->sample_size = shard_sample_sizes[i+1]; + } + } + + static std::vector<Wrapped<R>> query(S *shard, void *q_state, void *parms) { + auto lower_key = ((Parms<R> *) parms)->lower_bound; + auto upper_key = ((Parms<R> *) parms)->upper_bound; + auto rng = ((Parms<R> *) parms)->rng; + + auto state = (State<R> *) q_state; + auto sample_sz = state->sample_size; + + std::vector<Wrapped<R>> result_set; + + if (sample_sz == 0 || state->lower_bound == shard->get_record_count()) { + return result_set; + } + + size_t attempts = 0; + size_t range_length = state->upper_bound - state->lower_bound; + do { + attempts++; + size_t idx = (range_length > 0) ? gsl_rng_uniform_int(rng, range_length) : 0; + result_set.emplace_back(*shard->get_record_at(state->lower_bound + idx)); + } while (attempts < sample_sz); + + return result_set; + } + + static std::vector<Wrapped<R>> buffer_query(MutableBuffer<R> *buffer, void *state, void *parms) { + auto st = (BufferState<R> *) state; + auto p = (Parms<R> *) parms; + + std::vector<Wrapped<R>> result; + result.reserve(st->sample_size); + + if constexpr (Rejection) { + for (size_t i=0; i<st->sample_size; i++) { + auto idx = gsl_rng_uniform_int(p->rng, st->cutoff); + auto rec = buffer->get_data() + idx; + + if (rec->rec.key >= p->lower_bound && rec->rec.key <= p->upper_bound) { + result.emplace_back(*rec); + } + } + + return result; + } + + for (size_t i=0; i<st->sample_size; i++) { + auto idx = gsl_rng_uniform_int(p->rng, st->records.size()); + result.emplace_back(st->records[idx]); + } + + return result; + } + + static std::vector<R> merge(std::vector<std::vector<Wrapped<R>>> &results, void *parms) { + std::vector<R> output; + + for (size_t i=0; i<results.size(); i++) { + for (size_t j=0; j<results[i].size(); j++) { + output.emplace_back(results[i][j].rec); + } + } + + return output; + } + + static void delete_query_state(void *state) { + auto s = (State<R> *) state; + delete s; + } + + static void delete_buffer_query_state(void *state) { + auto s = (BufferState<R> *) state; + delete s; + } +}; +}} diff --git a/include/query/rangequery.h b/include/query/rangequery.h new file mode 100644 index 0000000..b9ac9db --- /dev/null +++ b/include/query/rangequery.h @@ -0,0 +1,167 @@ +/* + * include/query/rangequery.h + * + * Copyright (C) 2023 Douglas B. Rumbaugh <drumbaugh@psu.edu> + * + * All rights reserved. Published under the Modified BSD License. + * + */ +#pragma once + +#include "framework/interface/Record.h" +#include "framework/interface/Shard.h" +#include "framework/structure/MutableBuffer.h" +#include "psu-ds/PriorityQueue.h" +#include "util/Cursor.h" + +namespace de { namespace rq { + +template <RecordInterface R> +struct Parms { + decltype(R::key) lower_bound; + decltype(R::key) upper_bound; +}; + +template <RecordInterface R> +struct State { + size_t start_idx; + size_t stop_idx; +}; + +template <RecordInterface R> +struct BufferState { + size_t cutoff; +}; + +template <ShardInterface S, RecordInterface R> +class Query { +public: + constexpr static bool EARLY_ABORT=false; + constexpr static bool SKIP_DELETE_FILTER=true; + + static void *get_query_state(S *shard, void *parms) { + auto res = new State<R>(); + auto p = (Parms<R> *) parms; + + res->start_idx = shard->get_lower_bound(p->lower_bound); + res->stop_idx = shard->get_record_count(); + + return res; + } + + static void* get_buffer_query_state(MutableBuffer<R> *buffer, void *parms) { + auto res = new BufferState<R>(); + res->cutoff = buffer->get_record_count(); + + return res; + } + + static void process_query_states(void *query_parms, std::vector<void*> &shard_states, std::vector<void*> &buffer_states) { + return; + } + + static std::vector<Wrapped<R>> query(S *shard, void *q_state, void *parms) { + std::vector<Wrapped<R>> records; + auto p = (Parms<R> *) parms; + auto s = (State<R> *) q_state; + + // if the returned index is one past the end of the + // records for the PGM, then there are not records + // in the index falling into the specified range. + if (s->start_idx == shard->get_record_count()) { + return records; + } + + auto ptr = shard->get_record_at(s->start_idx); + + // roll the pointer forward to the first record that is + // greater than or equal to the lower bound. + while(ptr->rec.key < p->lower_bound) { + ptr++; + } + + while (ptr->rec.key <= p->upper_bound && ptr < shard->get_data() + s->stop_idx) { + records.emplace_back(*ptr); + ptr++; + } + + return records; + } + + static std::vector<Wrapped<R>> buffer_query(MutableBuffer<R> *buffer, void *state, void *parms) { + auto p = (Parms<R> *) parms; + auto s = (BufferState<R> *) state; + + std::vector<Wrapped<R>> records; + for (size_t i=0; i<s->cutoff; i++) { + auto rec = buffer->get_data() + i; + if (rec->rec.key >= p->lower_bound && rec->rec.key <= p->upper_bound) { + records.emplace_back(*rec); + } + } + + return records; + } + + static std::vector<R> merge(std::vector<std::vector<Wrapped<R>>> &results, void *parms) { + std::vector<Cursor<Wrapped<R>>> cursors; + cursors.reserve(results.size()); + + psudb::PriorityQueue<Wrapped<R>> pq(results.size()); + size_t total = 0; + size_t tmp_n = results.size(); + + + for (size_t i = 0; i < tmp_n; ++i) + if (results[i].size() > 0){ + auto base = results[i].data(); + cursors.emplace_back(Cursor{base, base + results[i].size(), 0, results[i].size()}); + assert(i == cursors.size() - 1); + total += results[i].size(); + pq.push(cursors[i].ptr, tmp_n - i - 1); + } else { + cursors.emplace_back(Cursor<Wrapped<R>>{nullptr, nullptr, 0, 0}); + } + + if (total == 0) { + return std::vector<R>(); + } + + std::vector<R> output; + output.reserve(total); + + while (pq.size()) { + auto now = pq.peek(); + auto next = pq.size() > 1 ? pq.peek(1) : psudb::queue_record<Wrapped<R>>{nullptr, 0}; + if (!now.data->is_tombstone() && next.data != nullptr && + now.data->rec == next.data->rec && next.data->is_tombstone()) { + + pq.pop(); pq.pop(); + auto& cursor1 = cursors[tmp_n - now.version - 1]; + auto& cursor2 = cursors[tmp_n - next.version - 1]; + if (advance_cursor<Wrapped<R>>(cursor1)) pq.push(cursor1.ptr, now.version); + if (advance_cursor<Wrapped<R>>(cursor2)) pq.push(cursor2.ptr, next.version); + } else { + auto& cursor = cursors[tmp_n - now.version - 1]; + if (!now.data->is_tombstone()) output.push_back(cursor.ptr->rec); + pq.pop(); + + if (advance_cursor<Wrapped<R>>(cursor)) pq.push(cursor.ptr, now.version); + } + } + + return output; + } + + static void delete_query_state(void *state) { + auto s = (State<R> *) state; + delete s; + } + + static void delete_buffer_query_state(void *state) { + auto s = (BufferState<R> *) state; + delete s; + } +}; + +}} diff --git a/include/query/wirs.h b/include/query/wirs.h new file mode 100644 index 0000000..1113b1d --- /dev/null +++ b/include/query/wirs.h @@ -0,0 +1,240 @@ +/* + * include/query/wirs.h + * + * Copyright (C) 2023 Douglas B. Rumbaugh <drumbaugh@psu.edu> + * + * All rights reserved. Published under the Modified BSD License. + * + */ +#pragma once + +#include "framework/interface/Record.h" +#include "framework/interface/Shard.h" +#include "framework/structure/MutableBuffer.h" +#include "psu-ds/Alias.h" + +namespace de { namespace wirs { + +template <WeightedRecordInterface R> +struct Parms { + decltype(R::key) lower_bound; + decltype(R::key) upper_bound; + size_t sample_size; + gsl_rng *rng; +}; + +template <WeightedRecordInterface R> +struct State { + decltype(R::weight) total_weight; + std::vector<void*> nodes; + psudb::Alias* top_level_alias; + size_t sample_size; + + State() { + total_weight = 0; + top_level_alias = nullptr; + } + + ~State() { + if (top_level_alias) delete top_level_alias; + } +}; + +template <RecordInterface R> +struct BufferState { + size_t cutoff; + psudb::Alias* alias; + std::vector<Wrapped<R>> records; + decltype(R::weight) max_weight; + size_t sample_size; + decltype(R::weight) total_weight; + + ~BufferState() { + delete alias; + } +}; + +template <ShardInterface S, RecordInterface R, bool Rejection=true> +class Query { +public: + constexpr static bool EARLY_ABORT=false; + constexpr static bool SKIP_DELETE_FILTER=false; + + static void *get_query_state(S *shard, void *parms) { + auto res = new State<R>(); + decltype(R::key) lower_key = ((Parms<R> *) parms)->lower_bound; + decltype(R::key) upper_key = ((Parms<R> *) parms)->upper_bound; + + std::vector<decltype(R::weight)> weights; + res->total_weight = shard->find_covering_nodes(lower_key, upper_key, res->nodes, weights); + + std::vector<double> normalized_weights; + for (auto weight : weights) { + normalized_weights.emplace_back(weight / res->total_weight); + } + + res->top_level_alias = new psudb::Alias(normalized_weights); + res->sample_size = 0; + + return res; + } + + static void* get_buffer_query_state(MutableBuffer<R> *buffer, void *parms) { + BufferState<R> *state = new BufferState<R>(); + auto parameters = (Parms<R>*) parms; + + if constexpr (Rejection) { + state->cutoff = buffer->get_record_count() - 1; + state->max_weight = buffer->get_max_weight(); + state->total_weight = buffer->get_total_weight(); + state->sample_size = 0; + return state; + } + + std::vector<decltype(R::weight)> weights; + + state->cutoff = buffer->get_record_count() - 1; + decltype(R::weight) total_weight = 0; + + for (size_t i = 0; i <= state->cutoff; i++) { + auto rec = buffer->get_data() + i; + + if (rec->rec.key >= parameters->lower_bound && rec->rec.key <= parameters->upper_bound && !rec->is_tombstone() && !rec->is_deleted()) { + weights.push_back(rec->rec.weight); + state->records.push_back(*rec); + total_weight += rec->rec.weight; + } + } + + std::vector<double> normalized_weights; + for (size_t i = 0; i < weights.size(); i++) { + normalized_weights.push_back(weights[i] / total_weight); + } + + state->total_weight = total_weight; + state->alias = new psudb::Alias(normalized_weights); + state->sample_size = 0; + + return state; + } + + static void process_query_states(void *query_parms, std::vector<void*> &shard_states, std::vector<void*> &buffer_states) { + auto p = (Parms<R> *) query_parms; + + std::vector<size_t> shard_sample_sizes(shard_states.size()+buffer_states.size(), 0); + size_t buffer_sz = 0; + + std::vector<decltype(R::weight)> weights; + + decltype(R::weight) total_weight = 0; + for (auto &s : buffer_states) { + auto bs = (BufferState<R> *) s; + total_weight += bs->total_weight; + weights.push_back(bs->total_weight); + } + + for (auto &s : shard_states) { + auto state = (State<R> *) s; + total_weight += state->total_weight; + weights.push_back(state->total_weight); + } + + std::vector<double> normalized_weights; + for (auto w : weights) { + normalized_weights.push_back((double) w / (double) total_weight); + } + + auto shard_alias = psudb::Alias(normalized_weights); + for (size_t i=0; i<p->sample_size; i++) { + auto idx = shard_alias.get(p->rng); + + if (idx < buffer_states.size()) { + auto state = (BufferState<R> *) buffer_states[idx]; + state->sample_size++; + } else { + auto state = (State<R> *) shard_states[idx - buffer_states.size()]; + state->sample_size++; + } + } + } + + static std::vector<Wrapped<R>> query(S *shard, void *q_state, void *parms) { + auto lower_key = ((Parms<R> *) parms)->lower_bound; + auto upper_key = ((Parms<R> *) parms)->upper_bound; + auto rng = ((Parms<R> *) parms)->rng; + + auto state = (State<R> *) q_state; + auto sample_size = state->sample_size; + + std::vector<Wrapped<R>> result_set; + + if (sample_size == 0) { + return result_set; + } + size_t cnt = 0; + size_t attempts = 0; + + for (size_t i=0; i<sample_size; i++) { + auto rec = shard->get_weighted_sample(lower_key, upper_key, + state->nodes[state->top_level_alias->get(rng)], + rng); + if (rec) { + result_set.emplace_back(*rec); + } + } + + return result_set; + } + + static std::vector<Wrapped<R>> buffer_query(MutableBuffer<R> *buffer, void *state, void *parms) { + auto st = (BufferState<R> *) state; + auto p = (Parms<R> *) parms; + + std::vector<Wrapped<R>> result; + result.reserve(st->sample_size); + + if constexpr (Rejection) { + for (size_t i=0; i<st->sample_size; i++) { + auto idx = gsl_rng_uniform_int(p->rng, st->cutoff); + auto rec = buffer->get_data() + idx; + + auto test = gsl_rng_uniform(p->rng) * st->max_weight; + + if (test <= rec->rec.weight && rec->rec.key >= p->lower_bound && rec->rec.key <= p->upper_bound) { + result.emplace_back(*rec); + } + } + return result; + } + + for (size_t i=0; i<st->sample_size; i++) { + auto idx = st->alias->get(p->rng); + result.emplace_back(st->records[idx]); + } + + return result; + } + + static std::vector<R> merge(std::vector<std::vector<Wrapped<R>>> &results, void *parms) { + std::vector<R> output; + + for (size_t i=0; i<results.size(); i++) { + for (size_t j=0; j<results[i].size(); j++) { + output.emplace_back(results[i][j].rec); + } + } + + return output; + } + + static void delete_query_state(void *state) { + auto s = (State<R> *) state; + delete s; + } + + static void delete_buffer_query_state(void *state) { + auto s = (BufferState<R> *) state; + delete s; + } +}; +}} diff --git a/include/query/wss.h b/include/query/wss.h new file mode 100644 index 0000000..794485c --- /dev/null +++ b/include/query/wss.h @@ -0,0 +1,204 @@ +/* + * include/query/rangequery.h + * + * Copyright (C) 2023 Douglas B. Rumbaugh <drumbaugh@psu.edu> + * + * All rights reserved. Published under the Modified BSD License. + * + */ +#pragma once + +#include "framework/interface/Record.h" +#include "framework/interface/Shard.h" +#include "framework/structure/MutableBuffer.h" + +namespace de { namespace wss { + +template <WeightedRecordInterface R> +struct Parms { + size_t sample_size; + gsl_rng *rng; +}; + +template <WeightedRecordInterface R> +struct State { + decltype(R::weight) total_weight; + size_t sample_size; + + State() { + total_weight = 0; + } +}; + +template <RecordInterface R> +struct BufferState { + size_t cutoff; + size_t sample_size; + psudb::Alias *alias; + decltype(R::weight) max_weight; + decltype(R::weight) total_weight; + + ~BufferState() { + delete alias; + } +}; + +template <ShardInterface S, RecordInterface R, bool Rejection=true> +class Query { +public: + constexpr static bool EARLY_ABORT=false; + constexpr static bool SKIP_DELETE_FILTER=false; + + static void *get_query_state(S *shard, void *parms) { + auto res = new State<R>(); + res->total_weight = shard->get_total_weight(); + res->sample_size = 0; + + return res; + } + + static void* get_buffer_query_state(MutableBuffer<R> *buffer, void *parms) { + BufferState<R> *state = new BufferState<R>(); + auto parameters = (Parms<R>*) parms; + if constexpr (Rejection) { + state->cutoff = buffer->get_record_count() - 1; + state->max_weight = buffer->get_max_weight(); + state->total_weight = buffer->get_total_weight(); + return state; + } + + std::vector<double> weights; + + state->cutoff = buffer->get_record_count() - 1; + double total_weight = 0.0; + + for (size_t i = 0; i <= state->cutoff; i++) { + auto rec = buffer->get_data() + i; + weights.push_back(rec->rec.weight); + total_weight += rec->rec.weight; + } + + for (size_t i = 0; i < weights.size(); i++) { + weights[i] = weights[i] / total_weight; + } + + state->alias = new psudb::Alias(weights); + state->total_weight = total_weight; + + return state; + } + + static void process_query_states(void *query_parms, std::vector<void*> &shard_states, std::vector<void*> &buffer_states) { + auto p = (Parms<R> *) query_parms; + + std::vector<size_t> shard_sample_sizes(shard_states.size()+buffer_states.size(), 0); + size_t buffer_sz = 0; + + std::vector<decltype(R::weight)> weights; + + decltype(R::weight) total_weight = 0; + for (auto &s : buffer_states) { + auto bs = (BufferState<R> *) s; + total_weight += bs->total_weight; + weights.push_back(bs->total_weight); + } + + for (auto &s : shard_states) { + auto state = (State<R> *) s; + total_weight += state->total_weight; + weights.push_back(state->total_weight); + } + + std::vector<double> normalized_weights; + for (auto w : weights) { + normalized_weights.push_back((double) w / (double) total_weight); + } + + auto shard_alias = psudb::Alias(normalized_weights); + for (size_t i=0; i<p->sample_size; i++) { + auto idx = shard_alias.get(p->rng); + + if (idx < buffer_states.size()) { + auto state = (BufferState<R> *) buffer_states[idx]; + state->sample_size++; + } else { + auto state = (State<R> *) shard_states[idx - buffer_states.size()]; + state->sample_size++; + } + } + } + + static std::vector<Wrapped<R>> query(S *shard, void *q_state, void *parms) { + auto rng = ((Parms<R> *) parms)->rng; + + auto state = (State<R> *) q_state; + auto sample_size = state->sample_size; + + std::vector<Wrapped<R>> result_set; + + if (sample_size == 0) { + return result_set; + } + size_t attempts = 0; + do { + attempts++; + size_t idx = shard->get_weighted_sample(rng); + result_set.emplace_back(*shard->get_record_at(idx)); + } while (attempts < sample_size); + + return result_set; + } + + static std::vector<Wrapped<R>> buffer_query(MutableBuffer<R> *buffer, void *state, void *parms) { + auto st = (BufferState<R> *) state; + auto p = (Parms<R> *) parms; + + std::vector<Wrapped<R>> result; + result.reserve(st->sample_size); + + if constexpr (Rejection) { + for (size_t i=0; i<st->sample_size; i++) { + auto idx = gsl_rng_uniform_int(p->rng, st->cutoff); + auto rec = buffer->get_data() + idx; + + auto test = gsl_rng_uniform(p->rng) * st->max_weight; + + if (test <= rec->rec.weight) { + result.emplace_back(*rec); + } + } + return result; + } + + for (size_t i=0; i<st->sample_size; i++) { + auto idx = st->alias->get(p->rng); + result.emplace_back(*(buffer->get_data() + idx)); + } + + return result; + } + + static std::vector<R> merge(std::vector<std::vector<Wrapped<R>>> &results, void *parms) { + std::vector<R> output; + + for (size_t i=0; i<results.size(); i++) { + for (size_t j=0; j<results[i].size(); j++) { + output.emplace_back(results[i][j].rec); + } + } + + return output; + } + + static void delete_query_state(void *state) { + auto s = (State<R> *) state; + delete s; + } + + static void delete_buffer_query_state(void *state) { + auto s = (BufferState<R> *) state; + delete s; + } +}; + +}} |