ALEX Benchmarking: added benchmark for ALEX

2 files changed, 243 insertions, 235 deletions

diff --git a/benchmarks/include/bench_utility.h b/benchmarks/include/bench_utility.h
index 28040be..2ab1532 100644
--- a/benchmarks/include/bench_utility.h
+++ b/benchmarks/include/bench_utility.h
@@ -17,6 +17,7 @@
 #include "ds/BTree.h"
 #include "shard/VPTree.h"
 #include "mtree.h"
+#include "standalone_utility.h"
 
 #include <cstdlib>
 #include <cstdio>
@@ -49,25 +50,6 @@ typedef de::DynamicExtension<Rec, de::MemISAM<Rec>, de::IRSQuery<Rec>> ExtendedI
 typedef de::DynamicExtension<Rec, de::MemISAM<Rec>, de::ISAMRangeQuery<Rec>> ExtendedISAM_RQ;
 typedef de::DynamicExtension<Word2VecRec, de::VPTree<Word2VecRec>, de::KNNQuery<Word2VecRec>> ExtendedVPTree_KNN;
 
-struct btree_record {
-    key_type key;
-    value_type value;
-
-   inline bool operator<(const btree_record& other) const {
-        return key < other.key || (key == other.key && value < other.value);
-    }
-
-    inline bool operator==(const btree_record& other) const {
-        return key == other.key && value == other.value;
-    }
-};
-
-struct btree_key_extract {
-    static const key_type &get(const btree_record &v) {
-        return v.key;
-    }
-};
-
 struct euclidean_distance {
     double operator()(const Word2VecRec &first, const Word2VecRec &second) const {
         double dist = 0;
@@ -99,189 +81,6 @@ struct cosine_similarity {
 typedef tlx::BTree<key_type, btree_record, btree_key_extract> TreeMap;
 typedef mt::mtree<Word2VecRec, euclidean_distance> MTree;
 
-static gsl_rng *g_rng;
-static std::set<WRec> *g_to_delete;
-static bool g_osm_data;
-
-static key_type g_min_key = UINT64_MAX;
-static key_type g_max_key = 0;
-
-static size_t g_max_record_cnt = 0;
-static size_t g_reccnt = 0;
-
-static constexpr unsigned int DEFAULT_SEED = 0;
-
-static unsigned int get_random_seed()
-{
-    unsigned int seed = 0;
-    std::fstream urandom;
-    urandom.open("/dev/urandom", std::ios::in|std::ios::binary);
-    urandom.read((char *) &seed, sizeof(seed));
-    urandom.close();
-
-    return seed;
-}
-
-static key_type osm_to_key(const char *key_field) {
-    double tmp_key = (atof(key_field) + 180) * 10e6;
-    return (key_type) tmp_key;
-}
-
-static void init_bench_rng(unsigned int seed, const gsl_rng_type *type) 
-{
-    g_rng = gsl_rng_alloc(type);
-    gsl_rng_set(g_rng, seed);
-}
-
-static void init_bench_env(size_t max_reccnt, bool random_seed, bool osm_correction=true)
-{
-    unsigned int seed = (random_seed) ? get_random_seed() : DEFAULT_SEED;
-    init_bench_rng(seed, gsl_rng_mt19937);
-    g_to_delete = new std::set<WRec>();
-    g_osm_data = osm_correction;
-    g_max_record_cnt = max_reccnt;
-    g_reccnt = 0;
-}
-
-static void delete_bench_env()
-{
-    gsl_rng_free(g_rng);
-    delete g_to_delete;
-}
-
-/*
- * NOTE: The QP type must have lower_bound and upper_bound attributes, which
- * this function will initialize. Any other query parameter attributes must
- * be manually initialized after the call.
- */
-template <typename QP>
-static std::vector<QP> read_range_queries(std::string fname, double selectivity) {
-    std::vector<QP> queries;
-
-    FILE *qf = fopen(fname.c_str(), "r");
-    size_t start, stop;
-    double sel;
-    while (fscanf(qf, "%zu%zu%lf\n", &start, &stop, &sel) != EOF) {
-        if (start < stop && std::abs(sel - selectivity) < 0.1) {
-            QP q;
-            q.lower_bound = start;
-            q.upper_bound = stop;
-            queries.push_back(q);
-        }
-    }
-    fclose(qf);
-
-    return queries;
-}
-
-template <typename QP>
-static std::vector<QP> read_knn_queries(std::string fname, size_t k) {
-    std::vector<QP> queries;
-
-    FILE *qf = fopen(fname.c_str(), "r");
-    char *line = NULL;
-    size_t len = 0;
-
-    while (getline(&line, &len, qf) > 0) {
-        char *token;
-        QP query;
-        size_t idx = 0;
-
-        token = strtok(line, " ");
-        do {
-            query.point.data[idx++] = atof(token);
-        } while ((token = strtok(NULL, " ")));
-
-        query.k = k;
-        queries.emplace_back(query);
-    }
-
-    free(line);
-    fclose(qf);
-
-    return queries;
-}
-
-static bool next_vector_record(std::fstream &file, Word2VecRec &record, bool binary=false) {
-    std::string line;
-    if (std::getline(file, line, '\n')) {
-        std::stringstream line_stream(line);
-        for (size_t i=0; i<300; i++) {
-            std::string dimension;
-
-            std::getline(line_stream, dimension, ' ');
-            record.data[i] = atof(dimension.c_str());
-        }
-
-        g_reccnt++;
-
-        return true;
-    }
-
-    return false;
-
-}
-
-
-template <de::KVPInterface R>
-static bool next_record(std::fstream &file, R &record, bool binary=false)
-{
-    static value_type value = 1;
-    if (g_reccnt >= g_max_record_cnt) return false;
-
-    if (binary) {
-        if (file.good()) {
-            decltype(R::key) key; 
-
-            file.read((char*) &key, sizeof(key));
-            record.key = key;
-            record.value = value;
-            value++;
-
-            if constexpr (de::WeightedRecordInterface<R>) {
-                decltype(R::weight) weight;
-                file.read((char*) &weight, sizeof(weight));
-                record.weight = weight;
-            }
-
-            if (record.key < g_min_key) g_min_key = record.key;
-            if (record.key > g_max_key) g_max_key = record.key;
-
-            return true;
-        }
-
-        return false;
-    }
-
-    std::string line;
-    if (std::getline(file, line, '\n')) {
-        std::stringstream line_stream(line);
-        std::string key_field;
-        std::string value_field;
-        std::string weight_field;
-
-        std::getline(line_stream, value_field, '\t');
-        std::getline(line_stream, key_field, '\t');
-        std::getline(line_stream, weight_field, '\t');
-
-        record.key = (g_osm_data) ? osm_to_key(key_field.c_str()) : atol(key_field.c_str());
-        record.value = atol(value_field.c_str());
-
-        if constexpr (de::WeightedRecordInterface<R>) {
-            record.weight = atof(weight_field.c_str());
-        }
-
-        if (record.key < g_min_key) g_min_key = record.key;
-        if (record.key > g_max_key) g_max_key = record.key;
-
-        g_reccnt++;
-
-        return true;
-    }
-
-    return false;
-}
-
 template <de::RecordInterface R>
 static bool build_insert_vec(std::fstream &file, std::vector<R> &vec, size_t n, 
                              double delete_prop, std::vector<R> &to_delete, bool binary=false) {
@@ -316,39 +115,6 @@ static bool build_insert_vec(std::fstream &file, std::vector<R> &vec, size_t n,
     return true;
 }
 
-template <de::RecordInterface R>
-static bool build_delete_vec(std::vector<R> &to_delete, std::vector<R> &vec, size_t n) {
-    vec.clear();
-
-    size_t cnt = 0;
-    while (cnt < n) {
-        if (to_delete.size() == 0) { 
-            return false;
-        }
-
-        auto i = gsl_rng_uniform_int(g_rng, to_delete.size());
-        vec.emplace_back(to_delete[i]);
-        to_delete.erase(to_delete.begin() + i);
-    }
-td:
-    return true;
-}
-
-/*
- * helper routines for displaying progress bars to stderr
- */
-static const char *g_prog_bar = "======================================================================";
-static const size_t g_prog_width = 50;
-
-static void progress_update(double percentage, std::string prompt) {
-    int val = (int) (percentage * 100);
-    int lpad = (int) (percentage * g_prog_width);
-    int rpad = (int) (g_prog_width - lpad);
-    fprintf(stderr, "\r(%3d%%) %20s [%.*s%*s]", val, prompt.c_str(), lpad, g_prog_bar, rpad, "");
-    fflush(stderr);   
-
-    if (percentage >= 1) fprintf(stderr, "\n");
-}
 
 template <typename DE, de::RecordInterface R>
 static bool warmup(std::fstream &file, DE &extended_index, size_t count, 
diff --git a/benchmarks/include/standalone_utility.h b/benchmarks/include/standalone_utility.h
new file mode 100644
index 0000000..272a332
--- /dev/null
+++ b/benchmarks/include/standalone_utility.h
@@ -0,0 +1,242 @@
+#include <cstdlib>
+#include <cstdio>
+#include <chrono>
+#include <algorithm>
+#include <numeric>
+#include <memory>
+#include <iostream>
+#include <fstream>
+#include <sstream>
+#include <unordered_set>
+#include <set>
+#include <string>
+#include <random>
+#include <gsl/gsl_rng.h>
+#include <cstring>
+
+typedef uint64_t key_type;
+typedef uint64_t value_type;
+typedef uint64_t weight_type;
+
+static gsl_rng *g_rng;
+static bool g_osm_data;
+
+struct btree_record {
+    key_type key;
+    value_type value;
+
+   inline bool operator<(const btree_record& other) const {
+        return key < other.key || (key == other.key && value < other.value);
+    }
+
+    inline bool operator==(const btree_record& other) const {
+        return key == other.key && value == other.value;
+    }
+};
+
+struct btree_key_extract {
+    static const key_type &get(const btree_record &v) {
+        return v.key;
+    }
+};
+
+static key_type g_min_key = UINT64_MAX;
+static key_type g_max_key = 0;
+
+static size_t g_max_record_cnt = 0;
+static size_t g_reccnt = 0;
+
+static constexpr unsigned int DEFAULT_SEED = 0;
+
+static unsigned int get_random_seed()
+{
+    unsigned int seed = 0;
+    std::fstream urandom;
+    urandom.open("/dev/urandom", std::ios::in|std::ios::binary);
+    urandom.read((char *) &seed, sizeof(seed));
+    urandom.close();
+
+    return seed;
+}
+
+static key_type osm_to_key(const char *key_field) {
+    double tmp_key = (atof(key_field) + 180) * 10e6;
+    return (key_type) tmp_key;
+}
+
+static void init_bench_rng(unsigned int seed, const gsl_rng_type *type) 
+{
+    g_rng = gsl_rng_alloc(type);
+    gsl_rng_set(g_rng, seed);
+}
+
+static void init_bench_env(size_t max_reccnt, bool random_seed, bool osm_correction=true)
+{
+    unsigned int seed = (random_seed) ? get_random_seed() : DEFAULT_SEED;
+    init_bench_rng(seed, gsl_rng_mt19937);
+    g_osm_data = osm_correction;
+    g_max_record_cnt = max_reccnt;
+    g_reccnt = 0;
+}
+
+static void delete_bench_env()
+{
+    gsl_rng_free(g_rng);
+}
+
+template <typename QP>
+static std::vector<QP> read_range_queries(std::string fname, double selectivity) {
+    std::vector<QP> queries;
+
+    FILE *qf = fopen(fname.c_str(), "r");
+    size_t start, stop;
+    double sel;
+    while (fscanf(qf, "%zu%zu%lf\n", &start, &stop, &sel) != EOF) {
+        if (start < stop && std::abs(sel - selectivity) < 0.1) {
+            QP q;
+            q.lower_bound = start;
+            q.upper_bound = stop;
+            queries.push_back(q);
+        }
+    }
+    fclose(qf);
+
+    return queries;
+}
+
+template <typename QP>
+static std::vector<QP> read_knn_queries(std::string fname, size_t k) {
+    std::vector<QP> queries;
+
+    FILE *qf = fopen(fname.c_str(), "r");
+    char *line = NULL;
+    size_t len = 0;
+
+    while (getline(&line, &len, qf) > 0) {
+        char *token;
+        QP query;
+        size_t idx = 0;
+
+        token = strtok(line, " ");
+        do {
+            query.point.data[idx++] = atof(token);
+        } while ((token = strtok(NULL, " ")));
+
+        query.k = k;
+        queries.emplace_back(query);
+    }
+
+    free(line);
+    fclose(qf);
+
+    return queries;
+}
+
+/*
+ * NOTE: The QP type must have lower_bound and upper_bound attributes, which
+ * this function will initialize. Any other query parameter attributes must
+ * be manually initialized after the call.
+ */
+template <typename R>
+static bool next_vector_record(std::fstream &file, R &record, bool binary=false) {
+    std::string line;
+    if (std::getline(file, line, '\n')) {
+        std::stringstream line_stream(line);
+        for (size_t i=0; i<300; i++) {
+            std::string dimension;
+
+            std::getline(line_stream, dimension, ' ');
+            record.data[i] = atof(dimension.c_str());
+        }
+
+        g_reccnt++;
+
+        return true;
+    }
+
+    return false;
+
+}
+
+template <typename R>
+static bool next_record(std::fstream &file, R &record, bool binary=false)
+{
+    static value_type value = 1;
+    if (g_reccnt >= g_max_record_cnt) return false;
+
+    if (binary) {
+        if (file.good()) {
+            decltype(R::key) key; 
+
+            file.read((char*) &key, sizeof(key));
+            record.key = key;
+            record.value = value;
+            value++;
+
+            if (record.key < g_min_key) g_min_key = record.key;
+            if (record.key > g_max_key) g_max_key = record.key;
+
+            return true;
+        }
+
+        return false;
+    }
+
+    std::string line;
+    if (std::getline(file, line, '\n')) {
+        std::stringstream line_stream(line);
+        std::string key_field;
+        std::string value_field;
+        std::string weight_field;
+
+        std::getline(line_stream, value_field, '\t');
+        std::getline(line_stream, key_field, '\t');
+        std::getline(line_stream, weight_field, '\t');
+
+        record.key = (g_osm_data) ? osm_to_key(key_field.c_str()) : atol(key_field.c_str());
+        record.value = atol(value_field.c_str());
+
+        if (record.key < g_min_key) g_min_key = record.key;
+        if (record.key > g_max_key) g_max_key = record.key;
+
+        g_reccnt++;
+
+        return true;
+    }
+
+    return false;
+}
+
+template <typename R>
+static bool build_delete_vec(std::vector<R> &to_delete, std::vector<R> &vec, size_t n) {
+    vec.clear();
+
+    size_t cnt = 0;
+    while (cnt < n) {
+        if (to_delete.size() == 0) { 
+            return false;
+        }
+
+        auto i = gsl_rng_uniform_int(g_rng, to_delete.size());
+        vec.emplace_back(to_delete[i]);
+        to_delete.erase(to_delete.begin() + i);
+    }
+td:
+    return true;
+}
+
+/*
+ * helper routines for displaying progress bars to stderr
+ */
+static const char *g_prog_bar = "======================================================================";
+static const size_t g_prog_width = 50;
+
+static void progress_update(double percentage, std::string prompt) {
+    int val = (int) (percentage * 100);
+    int lpad = (int) (percentage * g_prog_width);
+    int rpad = (int) (g_prog_width - lpad);
+    fprintf(stderr, "\r(%3d%%) %20s [%.*s%*s]", val, prompt.c_str(), lpad, g_prog_bar, rpad, "");
+    fflush(stderr);   
+
+    if (percentage >= 1) fprintf(stderr, "\n");
+}